{ "_id": "6a200d73b401979e73447e06", "Package": "oHMMed", "Type": "Package", "Title": "HMMs with Ordered Hidden States and Emission Densities", "Version": "1.0.2", "Authors@R": "c(\nperson(given = \"Michal\",\nfamily = \"Majka\",\nemail = \"michalmajka@hotmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-7524-8014\")),\nperson(given = c(\"Lynette\", \"Caitlin\"),\nfamily = \"Mikula\",\nemail = \"lynettecaitlin@gmail.com\",\nrole = \"aut\",\ncomment = c(ORCID =\"0000-0002-0252-4014\")),\nperson(given = \"Claus\",\nfamily = \"Vogl\",\nemail = \"claus.vogl@vetmeduni.ac.at\",\nrole = \"aut\",\ncomment = c(ORCID =\"0000-0002-3996-7863\"))\n)", "Description": "Inference using a class of Hidden Markov models (HMMs)\ncalled 'oHMMed'(ordered HMM with emission densities\n): The 'oHMMed' algorithms\nidentify the number of comparably homogeneous regions within\nobserved sequences with autocorrelation patterns. These are\nmodelled as discrete hidden states; the observed data points\nare then realisations of continuous probability distributions\nwith state-specific means that enable ordering of these\ndistributions. The observed sequence is labelled according to\nthe hidden states, permitting only neighbouring states that are\nalso neighbours within the ordering of their associated\ndistributions. The parameters that characterise these\nstate-specific distributions are then inferred. Relevant for\napplication to genomic sequences, time series, or any other\nsequence data with serial autocorrelation.", "License": "GPL-3", "URL": "https://github.com/LynetteCaitlin/oHMMed,\nhttps://lynettecaitlin.github.io/oHMMed/", "BugReports": "https://github.com/LynetteCaitlin/oHMMed/issues", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "cmake make libicu-dev libssl-dev", "Repository": "https://lynettecaitlin.r-universe.dev", "Date/Publication": "2025-02-07 19:12:02 UTC", "RemoteUrl": "https://github.com/lynettecaitlin/ohmmed", "RemoteRef": "HEAD", "RemoteSha": "aa72378481bd7da787b4d7ed43bcc4c1042233b0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 11:14:37 UTC", "User": "root" }, "Author": "Michal Majka [aut, cre] (ORCID:\n),\nLynette Caitlin Mikula [aut] (ORCID:\n),\nClaus Vogl [aut] (ORCID: )", "Maintainer": "Michal Majka ", "MD5sum": "32ad7a56328fe2d810ce56ddc65133bb", "_user": "lynettecaitlin", "_type": "src", "_file": 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